rs218675975 SNP Detail

Summary

• ID
  rs218675975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106342830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGCAGA GCCGCCGAGA
  GGAAGCGCGC CGCTCGGCAC GACGAGGGGT CCAGGGGCAC AGTGCCCAGC CCGGGCGGCG
  CGGCCAGCAG GCCCAGAGGC ATGATGGAGG CAGCCGCCAG CAGGTCCACG ACGCACAAGT
  GCGCTAAGTA GAAGGCATCT TGAAGGTCCG GCGTGCGCAG CACCACCACG AGCAGAGTGC
  Y
  GTTGCCCAGC ACGGCCCCCA CCTCTACGAG AACCGCCAGG ATAAACCCCA CCGAGCCCGC
  GAGTTCGGTG ACGCTGAGCC CCGAGCCGTT GGCCATCTGA ACGTTCAGGC TTCACTGGGG
  TTTGCTAGAG GAAGAGCGGA AATGGAGCCT CTGGCTCCAG GATTCCCATC ACCTGTCCCA
  TGCTCCTCAA GACCCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378830348	MGP_WTSI_9_106367962	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218675975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378830348	MGP_WTSI_9_106367962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106342830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22268	CpG island 22268	within coordinates
Gpr62	G protein-coupled receptor 62	within coordinates
Pcbp4	poly(rC) binding protein 4	1619 bp downstream
Rr686360	regulatory region 686360	498 bp distal
Rr686361	regulatory region 686361	297 bp proximal
Tssr86919	transcription start site region 86919	1815 bp downstream
Tssr91318	transcription start site region 91318	736 bp upstream
Tssr91319	transcription start site region 91319	709 bp upstream
Tssr91320	transcription start site region 91320	329 bp upstream
Tssr91321	transcription start site region 91321	334 bp downstream