rs218704109 SNP Detail

Summary

• ID
  rs218704109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24099266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCAGGCC GTGACTCGTT
  GGGCTGCGTA CTGTGGCTTC CTCTTCTTCC TCCTCTGGGA GCTTCCGGGA CGCCAAGGCC
  TGTTCCGGAA TAGCCGGCAC CCGTTTTCTC GGCCTCTCTC ATTCTCTGGC TTGTGACCTT
  CCGGCACCAT TTACACGGCA GGTGGCTGTG GAGGACCTTC CCCGCCCACG CTGCACTCCC
  R
  TCACTCAGAG CGCGCGCTGC GACCCAGGAA CTAATCAGCA GCTGCCCTAG GTAAGGGGAA
  GGGGGGACGC CCCGAGCCTG GGAGAGGCAG GCGCGCCGAC GGGGCGGGGT TGGGGGTGGG
  GCGTATTCAA GCCCCGCCCC CGCCCTGCCG TTAAAAGGTC GCTGGGCGGC TGGCCAATGG
  GAGTAGGAAC GTGAAGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783932	MGP_WTSI_7_25184860	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218704109					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783932	MGP_WTSI_7_25184860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24099266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1592 bp distal
Rr643437	regulatory region 643437	212 bp distal
Rr643438	regulatory region 643438	within coordinates
Rr643439	regulatory region 643439	84 bp proximal
Rr643440	regulatory region 643440	732 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	within coordinates
Tssr64959	transcription start site region 64959	168 bp downstream
Tssr64960	transcription start site region 64960	114 bp downstream
Tssr64961	transcription start site region 64961	23 bp downstream
Tssr64962	transcription start site region 64962	118 bp upstream
Tssr64963	transcription start site region 64963	136 bp upstream
Tssr64964	transcription start site region 64964	172 bp upstream
Tssr71075	transcription start site region 71075	17 bp downstream