rs218711764 SNP Detail

Summary

• ID
  rs218711764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20793218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCCTA ATTTAGCTCT
  CTAGGCCCAG AGGGTAGTGA TAGTCTCATT GCTACTTACC TGTCATTTTT AGATTGTATC
  TATCACAACT CATCTGGGTA CCTTCTACCC ATAGATCTGG GTTCTTTTTT AGAGACTGTT
  GCTAAAAAAT GCCTTGGAGT ACCTCAAGGT AGTGAAATGT GGAGTGGATA AATGGAGGCA
  K
  GGATGACTGA GTAACTCAAA AGTACGCTAA GAGCTCAGTG AGAAGGCTGC ATGAAGGACT
  ATATGCATGG GAGTACAGCT ATGTGACTGC ATTAGAAACT GAGGCACACA GAGGCTGGGA
  AGTCTTCCCT AATTGCTCCT CCTCCTCTTT TCTTTCTCTC CTCTTCTCTA AGCTAGGAGA
  TGGCACTGGC AAGGCAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403205881	MGP_WTSI_X_20504105	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218711764					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403205881	MGP_WTSI_X_20504105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20793218 () rs orientation: forward

Symbol	Name	Function Class
Cfp	complement factor properdin	within coordinates
Gm61816	predicted gene, 61816	within coordinates
Tssr160693	transcription start site region 160693	1439 bp downstream
Tssr160694	transcription start site region 160694	1246 bp downstream
Tssr160695	transcription start site region 160695	1664 bp upstream
Tssr163090	transcription start site region 163090	706 bp downstream
Tssr163091	transcription start site region 163091	1078 bp downstream
Tssr163092	transcription start site region 163092	1119 bp downstream
Tssr163093	transcription start site region 163093	1403 bp downstream
Tssr163094	transcription start site region 163094	1525 bp downstream
Tssr163095	transcription start site region 163095	1793 bp downstream