rs218721244 SNP Detail

Summary

• ID
  rs218721244
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCGGGTC AGCACTGCAT
  CCCCCACACC ATCCTCAATC TGCAGAGGAT AGGAGAGCAT GAGGGAGGGG AAAAGGTCCC
  CAAGATAAAG GAGGCTAAGA AGGGGAGGAG CTCAGAATGG GTGGCCTGGT TCAGCAAGGT
  GAGTGACTGG TAGGGGCACT AAGAGGTGGG ATGGGCTCTG GAGTGATGAT GGGGCGTGGT
  S
  GGGGGGCGGG GGAGGGAGCA GGGAGAGGCT GCCATTCTAA GCTCTCATTC CAAGGGGTGA
  GAAAGTACCA CTACGCGCGT GAGGGAGTGG GCCAGAGAAA TCTTCTTATC GCCATCCTGG
  ACCCCAAAAA TCACGAAGGC TGTCCCGTCC ACGTTTTTCC CGTACAGGAA CCTGAGAGAC
  AAGGAGACTT GGGGTCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573197	MGP_WTSI_17_57363998	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218721244					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573197	MGP_WTSI_17_57363998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531575 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	within coordinates
Tssr145378	transcription start site region 145378	1440 bp downstream
Tssr145379	transcription start site region 145379	1365 bp downstream
Tssr145380	transcription start site region 145380	1320 bp downstream
Tssr145381	transcription start site region 145381	1266 bp downstream
Tssr145382	transcription start site region 145382	712 bp downstream
Tssr145383	transcription start site region 145383	635 bp downstream
Tssr145384	transcription start site region 145384	465 bp downstream
Tssr145385	transcription start site region 145385	674 bp upstream
Tssr145386	transcription start site region 145386	1450 bp upstream
Tssr145387	transcription start site region 145387	1681 bp upstream
Tssr148942	transcription start site region 148942	1729 bp upstream
Tssr148943	transcription start site region 148943	1689 bp upstream
Tssr148944	transcription start site region 148944	1675 bp upstream
Tssr148945	transcription start site region 148945	1638 bp upstream
Tssr148946	transcription start site region 148946	1626 bp upstream
Tssr148947	transcription start site region 148947	1376 bp upstream
Tssr148948	transcription start site region 148948	1292 bp upstream
Tssr148949	transcription start site region 148949	1236 bp upstream
Tssr148950	transcription start site region 148950	682 bp upstream
Tssr148951	transcription start site region 148951	653 bp upstream
Tssr148952	transcription start site region 148952	593 bp upstream
Tssr148953	transcription start site region 148953	412 bp upstream
Tssr148954	transcription start site region 148954	387 bp upstream
Tssr148955	transcription start site region 148955	242 bp upstream
Tssr148956	transcription start site region 148956	209 bp upstream
Tssr148957	transcription start site region 148957	305 bp downstream
Tssr148958	transcription start site region 148958	528 bp downstream
Tssr148959	transcription start site region 148959	688 bp downstream
Tssr148960	transcription start site region 148960	1442 bp downstream
Tssr148961	transcription start site region 148961	1479 bp downstream
Tssr148962	transcription start site region 148962	1625 bp downstream
Tssr148963	transcription start site region 148963	1677 bp downstream
Tssr148964	transcription start site region 148964	1710 bp downstream