rs218731227 SNP Detail

Summary

• ID
  rs218731227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30115833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGTGTG TGGAGCAGGT
  GTGCATATGC ACTGGCAGCC ATGTGGGGGT CAGAAGACAA CCCGTGGGGG CTGGTTCTCT
  CCTTCCACCT TGTGGATCTC TGAACTCTAA ATTCTAGTTG TCAAGCTTGG CAGCAAGTGC
  TTTACCCACT GAACCATCTC ACCAGCCCCA AGCCTCCTTC CTAACCTTTG GGCTCTGGGT
  R
  AGGCTATGTC TCTAGGGAAA CACACACCCA GGCTGGTCTC TGGTACATGC TCTCAGAGAC
  TCTGCCCCTG GGAGGCACAG ACCCCTGCTC TGTGACCCAA TTTCTGGAAG TCTACCTCCC
  TCCCTGTAGC CAGTTTTGCC CATTCGACTG ACTCCTTGCT GGAGGAACTT TTTCTCTGAA
  AAGTGTTAGA ATCTCTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906708	MGP_WTSI_7_31201427	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218731227					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906708	MGP_WTSI_7_31201427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30115833 () rs orientation: forward

Symbol	Name	Function Class
Hcst	hematopoietic cell signal transducer	1304 bp downstream
Rr155980	regulatory region 155980	1233 bp distal
Rr167464	regulatory region 167464	1632 bp distal
Rr167465	regulatory region 167465	1232 bp distal
Rr167466	regulatory region 167466	1567 bp proximal
Tssr65705	transcription start site region 65705	1822 bp downstream
Tssr65706	transcription start site region 65706	874 bp downstream
Tssr65707	transcription start site region 65707	667 bp downstream
Tssr65708	transcription start site region 65708	926 bp upstream
Tssr65709	transcription start site region 65709	981 bp upstream
Tssr65710	transcription start site region 65710	1750 bp upstream
Tssr71738	transcription start site region 71738	975 bp downstream
Tssr71739	transcription start site region 71739	1055 bp downstream
Tssr71740	transcription start site region 71740	1162 bp downstream
Tyrobp	TYRO protein tyrosine kinase binding protein	within coordinates