rs218733116 SNP Detail

Summary

• ID
  rs218733116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126833540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTAGGT TTTCTAAATT
  GAAATACTGT AATATAACAC AGGCTTGAGT AGATAGTTAG AAACTCGGCC CAGGGTAGGG
  TTTCCTCCAA GTAGGAAACA CTTCTCTCAA ACCCGATGGC ATTCAGTGCT GGGATGATTT
  ATGGGACCGC AGAGAGGGGC TTGGAAAGTT TTCTACTAAC TTTCTTTCTT TCTTTTTTTT
  K
  GGGGGGGGGG TTCCTGTGTA GCCCTGGCTA TCCTGGAACT CACTCTGTAG ACTAGGCTGT
  CCTCGAACTC AGAAATCCCC CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGGCTTGCAC
  CACCACACCG GGCTTCTACT AACTTTCATG TGGTGGTGGC ACATGCCTTT AATCCTAGCA
  CTCAGAAGTC AGAGGAATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322451257	CHEV_7_134377882	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218733116					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126833540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19733	CpG island 19733	655 bp distal
Gm4532	predicted gene 4532	1238 bp upstream
Rr166726	regulatory region 166726	within coordinates
Rr381454	regulatory region 381454	535 bp downstream
Septin1	septin 1	1238 bp upstream
Tssr69182	transcription start site region 69182	1464 bp downstream
Tssr69183	transcription start site region 69183	1295 bp downstream
Tssr69184	transcription start site region 69184	1051 bp downstream
Tssr74974	transcription start site region 74974	1714 bp upstream
Tssr74975	transcription start site region 74975	1616 bp upstream
Tssr74976	transcription start site region 74976	1400 bp upstream
Tssr74977	transcription start site region 74977	1133 bp upstream
Zfp553	zinc finger protein 553	within coordinates