rs218736852 SNP Detail

Summary

• ID
  rs218736852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6352993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTTTCC CATTTGTGGT
  CCATGTGTCA TCTTGAGTAT TTACAGATTG TTTTTGTCAC AAGAAATGTG GCTTCCCACA
  TTTTTTTTCC TTGGGAGAAA AGTGACACTA GCTTAATTCT AAATTGCTTT TCCAGGGACG
  TAAAAATGTT GCCTTGAAAA TGGGTTAAAG AAACAGTTAT TTGAACTGTT GCCTAGAATA
  R
  AAGATATTGG TTGTTGTTCC TAAGATGTAG AGAGTTCATA TGTGGAGCAC AGGCCAGGGC
  CCTGGTCCGT GATTCTTGCA TAAAGATGAT GTGATGAAGT GGGAGGACGG AGTGTGTGCA
  ACATGAACAC GTTTGTGCAG ACAGAGCGAG TGTGACACGA GGACATTTAA ATCAGCAGCA
  TCGAGTACCT GGGTCAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320210755	CHEV_2_6269228	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218736852					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6352993 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr551374	regulatory region 551374			1092 bp proximal
Rr551375	regulatory region 551375			1876 bp proximal
Usp6nl	USP6 N-terminal like			Intron
				Noncoding-Transcript-Variant