rs218745267 SNP Detail

Summary

• ID
  rs218745267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7349208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTAAAA TCCAGGCATA
  GTGGCTGTCT GTAATCCCAG CACATGGGAG GCAGAGATAG GGGGTGCTCA GGGCAAGTTG
  GCTAGCCAGA CTAGTAGAAA CAGGGGTCTC TGGCTTTGGT TGAGAGACCT CACCTCAATA
  CTGAAAGTGG AGCAGGTTTC AGGAAGATGC CTGAGTCAAC TTCAGGCCTC TACATGCATG
  Y
  ACATACTACA CGCACACACA CATACATGTG GACATACATA TACACACAGG CAGATACACA
  CACACACACA CACACACACA CAATTTATTA TCTCTGTGAG GAGAGTTGCT CACTGAAGAA
  AGACTTTCAG TCATTTGCCT TGTCAGTCAG TACAGAGCAG AGAAGCAGCA AACAGACAGA
  AAAAGACTAA AAATAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560255	MGP_WTSI_9_7349208	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218745267					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560255	MGP_WTSI_9_7349208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7349208 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83684	transcription start site region 83684	1798 bp downstream
Tssr83685	transcription start site region 83685	1735 bp downstream
Tssr83686	transcription start site region 83686	1686 bp downstream
Tssr83687	transcription start site region 83687	1668 bp downstream
Tssr83688	transcription start site region 83688	971 bp downstream
Tssr83689	transcription start site region 83689	617 bp downstream
Tssr83690	transcription start site region 83690	590 bp downstream
Tssr83691	transcription start site region 83691	561 bp downstream
Tssr83692	transcription start site region 83692	538 bp downstream
Tssr83693	transcription start site region 83693	506 bp downstream
Tssr83694	transcription start site region 83694	477 bp downstream
Tssr83695	transcription start site region 83695	395 bp downstream
Tssr83696	transcription start site region 83696	332 bp downstream
Tssr83697	transcription start site region 83697	291 bp downstream
Tssr83698	transcription start site region 83698	114 bp downstream
Tssr83699	transcription start site region 83699	90 bp downstream
Tssr83700	transcription start site region 83700	29 bp downstream
Tssr83701	transcription start site region 83701	within coordinates
Tssr83702	transcription start site region 83702	29 bp upstream
Tssr83703	transcription start site region 83703	512 bp upstream
Tssr83704	transcription start site region 83704	544 bp upstream
Tssr83705	transcription start site region 83705	798 bp upstream
Tssr83706	transcription start site region 83706	822 bp upstream
Tssr83707	transcription start site region 83707	857 bp upstream
Tssr83708	transcription start site region 83708	878 bp upstream
Tssr83709	transcription start site region 83709	898 bp upstream
Tssr83710	transcription start site region 83710	1408 bp upstream
Tssr83711	transcription start site region 83711	1895 bp upstream
Tssr88064	transcription start site region 88064	479 bp upstream
Tssr88065	transcription start site region 88065	388 bp upstream
Tssr88066	transcription start site region 88066	904 bp downstream