rs218746072 SNP Detail

Summary

• ID
  rs218746072
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46383328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA CAACCACTGT GTCTGATAAT
  A
  CCCCTGCCTC TCACCTGGGC ACTGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325822472	CHEV_19_46469379	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218746072					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46383328 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	within coordinates
Cpgi11002	CpG island 11002	1801 bp proximal
Gm59146	predicted gene, 59146	204 bp upstream
Rr405999	regulatory region 405999	150 bp upstream
Rr406000	regulatory region 406000	794 bp upstream
Rr406001	regulatory region 406001	1737 bp upstream
Rr548727	regulatory region 548727	within coordinates
Rr548728	regulatory region 548728	215 bp proximal
Rr548729	regulatory region 548729	839 bp proximal
Rr548730	regulatory region 548730	1517 bp proximal
Rr548731	regulatory region 548731	1852 bp proximal
Rr548732	regulatory region 548732	1960 bp proximal
Tssr156751	transcription start site region 156751	464 bp upstream
Tssr156752	transcription start site region 156752	485 bp upstream
Tssr156753	transcription start site region 156753	1996 bp upstream
Tssr159650	transcription start site region 159650	833 bp downstream