rs218746219 SNP Detail

Summary

• ID
  rs218746219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAACCAA GATTCATATC
  CCAGCTGCTT GGCTCTAACT ACACATTATT AAAAGTAAAG TGGGACCTTT AATCTTATTT
  AGAATCACAG GTAGAAACAT TCACACCAGA ATACATTTCA TTTGTCTGCC AATGAAATGT
  TCCATAACTG CAGACAATTT TGGCTCCAAA GGGACTTTTT TTTTTTTTTC AGAAATAGAA
  Y
  TGGTACTTCT AAAGAGTGGT GCAATTAAAG ATCTCTAAAT TCCTATAACA GAGGATTGCT
  CTGACAAAAC TTATCTAGCC TATAATGTCA ACAAAATTGA GCCTGAGAAA TGTTCTTTGA
  AAGAGTAGGG GAATTAAGTA AAGGATTCTC AAATGTTCCC TTTTAATGTG TTGTCAGACA
  TTGTATTATC TTCTTCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560298	MGP_WTSI_9_7351990	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218746219					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560298	MGP_WTSI_9_7351990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351990 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1553 bp upstream
Tssr83705	transcription start site region 83705	1963 bp downstream
Tssr83706	transcription start site region 83706	1936 bp downstream
Tssr83707	transcription start site region 83707	1914 bp downstream
Tssr83708	transcription start site region 83708	1896 bp downstream
Tssr83709	transcription start site region 83709	1873 bp downstream
Tssr83710	transcription start site region 83710	1356 bp downstream
Tssr83711	transcription start site region 83711	874 bp downstream
Tssr83712	transcription start site region 83712	5 bp downstream
Tssr83713	transcription start site region 83713	385 bp upstream
Tssr83714	transcription start site region 83714	557 bp upstream
Tssr83715	transcription start site region 83715	609 bp upstream
Tssr83716	transcription start site region 83716	880 bp upstream
Tssr83717	transcription start site region 83717	921 bp upstream
Tssr83718	transcription start site region 83718	941 bp upstream
Tssr83719	transcription start site region 83719	967 bp upstream
Tssr83720	transcription start site region 83720	996 bp upstream
Tssr83721	transcription start site region 83721	1248 bp upstream
Tssr83722	transcription start site region 83722	1450 bp upstream
Tssr83723	transcription start site region 83723	1574 bp upstream
Tssr83724	transcription start site region 83724	1895 bp upstream
Tssr88066	transcription start site region 88066	1867 bp upstream
Tssr88067	transcription start site region 88067	990 bp downstream
Tssr88068	transcription start site region 88068	1038 bp downstream
Tssr88069	transcription start site region 88069	1485 bp downstream