rs218748162 SNP Detail

Summary

• ID
  rs218748162
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85613664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGAAGGG ATACAGTCTA TTAGGGTATG
  GTGGAGACGT TAACTACAGT GTCTTTGTTT CCCTTGAGGG AACCAAAAAG GACTTAGCTG
  GGTTCCTTGA TGGAGGCAGG GACTACTTGG TAGATGATGT AAGCAGAAAG AATAGGAAAG
  K
  CATACCTCTC CGTTGTCTCA GAAACATGCA GGTAAAGTCA GAGACTGACA GGTATGTGGC
  ACAGAATTAT CACAGAAAAT GGCAAAAGAT GATAGTGTGT TCTGTGTGAG AGGAGCTGGC
  CTTTGGTTGC CATGACAGCA ATGACCTGTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319826439	CHEV_1_87582518	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218748162					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85613664 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	338 bp proximal
Rr366934	regulatory region 366934	1529 bp upstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7685	transcription start site region 7685	839 bp downstream