rs218752037 SNP Detail

Summary

• ID
  rs218752037
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31080623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcacaacta cttctaactc tagctccaag
  ggatcctggg ccctcttcag acctcaagag catagcatac acataagaca catacatgta
  tgcagacaaa acactcatat atgtaaaata ataataagga ggaagaagaa gaagaggaag
  M
  agaggaagaa TAACTAAAAA AAAAACAAAC AACAAACCAA TGTGGTCCAA ATTGATGGAA
  AGAGAAAAGC CTCAGGTTTT TATATATTCA ATTAGGACTA AAATATAAAG CTAGATGAAA
  TTCAGCACAA GAGGATACTC CTGAACtggt                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889495	CHEV_9_30976912	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218752037					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31080623 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	641 bp distal
Tssr88634	transcription start site region 88634	1669 bp upstream
Tssr88635	transcription start site region 88635	1623 bp upstream
Tssr88636	transcription start site region 88636	519 bp upstream
Tssr88637	transcription start site region 88637	485 bp upstream
Tssr88638	transcription start site region 88638	408 bp upstream
Tssr88639	transcription start site region 88639	1193 bp downstream
Tssr88640	transcription start site region 88640	1204 bp downstream
Tssr88641	transcription start site region 88641	1216 bp downstream
Tssr88642	transcription start site region 88642	1241 bp downstream
Tssr88643	transcription start site region 88643	1280 bp downstream