rs218752428 SNP Detail

Summary

• ID
  rs218752428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAACCT GGTGGCCAGG
  TCAGCTTTGA CATGTTAACT AGGCACCCCA GCTATTTGTC CCAGGTTTGA CACCTAACAG
  TTTCTTAATG TCACACCTGT TTACCCCAGG GGTGCTCTGT GATTAAGATT CGTTTCCTGG
  ACTTTTGAGG TAATGGGAGA TAATGGAAGG AAAGGTAGAC CAGTGCTTAT TTGAAAATCA
  Y
  TAGGACAGGG CTGGTGAGAT GGCTCAGCGG TTAAGAGCAC TGACTGCTCT TCCAAAGGTC
  CCGAGTTCGA ATCCCAGCAA CCACATGGTG GCTCACAACC ATCCATAATG AGATCTGACG
  CCCTCTTCTA GTGTGTCTGA AGACAACTAC AGTGTACTTA CATATAATAA ATAAATCTTT
  TTTTAAAAAA AGAAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312504	CHEV_4_129056579	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218752428					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1256 bp distal
Gm12980	predicted gene 12980	509 bp upstream
Rr377177	regulatory region 377177	479 bp upstream
Rr600215	regulatory region 600215	1230 bp distal
Rr600216	regulatory region 600216	1754 bp distal
Rr600217	regulatory region 600217	963 bp distal
Tssr43497	transcription start site region 43497	1497 bp upstream
Tssr43498	transcription start site region 43498	1411 bp upstream
Tssr43499	transcription start site region 43499	1385 bp upstream
Tssr43500	transcription start site region 43500	329 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1307 bp upstream