rs218753725 SNP Detail

Summary

• ID
  rs218753725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143579688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACACTTTGT TACTTATAAA AACAAATACT
  TTGGTCTGTT TTTTTTTGGG GGGGGGGACT TTTGTTATGT GTGACAAAGT GTAATTTGGG
  TATAGAAAGA AGTATGAGGT TAAAAAAATG TCTGCTCCAC AAATGTCTTT CTCCCGTCAA
  K
  GTGTCTCAGA ACCTCACTGC AAATGCAGGT TATAAAGAAC TGACTGTGCT TGTCTGTCCC
  TTTCACATCT CTGAACTTAT GCCTATATCA CAGCATCCAG TATTTCCTTG TCCCCTTTGT
  TTGCTTCTCT ACCTCCTAGG AGATGAACCG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010263	CHEV_1_145551080	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218753725					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143579688 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	1057 bp upstream
Cpgi835	CpG island 835	462 bp distal
Gm69373	predicted gene, 69373	1235 bp upstream
Rr419927	regulatory region 419927	1499 bp distal
Rr419928	regulatory region 419928	567 bp distal
Rr419929	regulatory region 419929	1017 bp distal
Tssr14091	transcription start site region 14091	1153 bp upstream
Tssr14092	transcription start site region 14092	1121 bp upstream
Tssr14093	transcription start site region 14093	1103 bp upstream