rs218759186 SNP Detail

Summary

• ID
  rs218759186
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181221710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATGTA TGTGTTTATA
  GTTTGTCTGT CCCTCTGACT CTACCCTTAG ATATGGTTGG CTGGATATGC CCTAGGATTG
  CTCTGGGAGG CTAATATTGT TCTGGGCAGG GGTGCAGAGT TAAGGAGTCC TAGGGAATCA
  GTTCTCTAAG TTTGGCTGGC TAAGCACAAC AGAGGATCCT GACATGTTCC TTGGGTACCC
  M
  AGCAGGTCAG GATCAGTGGG TAGCAAAAAG GCCACAGGTC TGTGGGAAGC TAACATCGTG
  CTGGTCTTAG AAAGGGAAGG CTTTACTTAA TTCCAGATTT GTTACTGCTT ACAGAATAGA
  CCTGTCCCAC CTATTGATTC ACTAGACTTG GCTCCAAAAT ACCACACCCT GACCCCAGAA
  CTTCATCTTT ACCTAAGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781047	MGP_WTSI_2_181314622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218759186					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781047	MGP_WTSI_2_181314622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181221710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	1177 bp proximal
Rr56332	regulatory region 56332	290 bp proximal
Rr397593	regulatory region 397593	1169 bp upstream
Tssr22325	transcription start site region 22325	1543 bp downstream
Tssr22326	transcription start site region 22326	578 bp downstream
Tssr22327	transcription start site region 22327	550 bp downstream
Tssr22328	transcription start site region 22328	392 bp downstream
Tssr22329	transcription start site region 22329	364 bp downstream
Tssr22330	transcription start site region 22330	350 bp downstream
Tssr28212	transcription start site region 28212	971 bp upstream
Tssr28213	transcription start site region 28213	1213 bp downstream
Tssr28214	transcription start site region 28214	1983 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates