rs218761085 SNP Detail

Summary

• ID
  rs218761085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166838936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCACTA GTCTTATAGC
  TTGGGTTTTC TTGCCTTGGT GTTTTGAGTT CAGGCATCCA CGGAGTCCAG TGCTGGCGTT
  GCCTGCCTGG TGTAGGAGTT TCAGGCAGTT GTGAGGTAGA TCCTCTTCAA GTGTTCTTAA
  CTGTTAGCCA CCTATCTCTC CAGCCCTATA GCAACCCTTT TATGTAGCAA CCCTTTTATG
  W
  AGCGGGGGAG ACAGGTCTTT AGAATTAGAT GGGGTCCTTA CCGGAGGTTG TGGGAGCTGA
  GTCGCTGGCA TCCTCTGGGC TTTTTTTTTT TTTAAGATTT ATTTATTATT ATTTGTAAGT
  ACATTGTGAA GAGGGCATCA GATCTCATTA TGGATGGTTG TGAGCCACCA TGTGGTTGCT
  GGGAATTGAA CTCAGGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356495858	MGP_WTSI_2_166822516	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218761085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356495858	MGP_WTSI_2_166822516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166838936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	395 bp distal
Rr40642	regulatory region 40642	465 bp proximal
Rr40643	regulatory region 40643	1465 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	451 bp downstream
Stau1	staufen double-stranded RNA binding protein 1	717 bp upstream
Tssr27718	transcription start site region 27718	907 bp upstream
Tssr27719	transcription start site region 27719	858 bp upstream
Tssr27720	transcription start site region 27720	796 bp upstream
Tssr27721	transcription start site region 27721	760 bp upstream
Tssr27722	transcription start site region 27722	733 bp upstream