rs218769532 SNP Detail

Summary

• ID
  rs218769532
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93122351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGATTA AAATCACCAC
  TGAGATTTTT AATGATACAT TTTATTTATA CAGCACCCCG CATTTTTATA GCATTCGCCT
  CCGGCAAGAT CGGTGAATAA TTTAGAATAA GGAGTAAAAC CAGCCTTCCA TAGAATTCTC
  AAAACCACAT CTGCTGCCCA TTTCCTAACC CTCCCTGTAC CTGCTGTGAG AGCCCCCCCC
  M
  CCCCACCCCC GCACACCTTC AGCCTCAGTT TCCCAACAGG AAGAAGATTC CCACTCGGTA
  CAGCTTGCAG ATGGTTATGT GCTGGCATTA GAGCAGCCTG AGTTATCTGA GTTCTTTTTA
  TGCTCTGGGC AGAGCTCAGA GCTCTGAGAC ATAAAAGAGA GCAAGATGGA AGGACTGGCT
  ACCTTTGGAG TCCACTGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395297	CHEV_2_93132163	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218769532					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93122351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr561147	regulatory region 561147			243 bp distal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant