rs218770563 SNP Detail

Summary

• ID
  rs218770563
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7671629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTCCA AACCATGCTA
  ATCCTCCCAA AGTGTGTATG GATCACTTAC TTGTCTGGAA ATTTGATTCT AAATTCTGAA
  GTCCGATTCT TTAGCCTGCT ATGTGTTCCA CATGGCTCTG GTTCTTGTAA CCCCGCAGGA
  TTCCTTCCTT TCAGTTCGCC TGCACTCTGT TAAAGCTTCA GCAGCCCTCC TCCTCCCCCC
  M
  CTTCCCCCCC CCCTCCTCCT CCTCTTCCTC CTGGTAACCT GGCTTTTCTC CTCGCCAATG
  GGGCAAGGCT ACACTCACTC CCATGTCCAC CCTATCCACT CTGCACAGTC CAGCCTGTCC
  TGTGAGGAGA CCTCATTGCT CATACACTGA GCACATCAGC CTCTCCCACA CCCCTTAACT
  TAATGGTCAC TCCATTTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C57BL/6J	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ
ss356879089	MGP_WTSI_3_7606569	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C57BL/6J	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ
rs218770563					SNP	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356879089	MGP_WTSI_3_7606569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7671629 () rs orientation: forward

Symbol	Name	Function Class
Il7	interleukin 7	within coordinates
Rr81463	regulatory region 81463	629 bp distal
Tssr32539	transcription start site region 32539	50 bp upstream
Tssr32540	transcription start site region 32540	19 bp upstream