rs218772415 SNP Detail

Summary

• ID
  rs218772415
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31195824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCAGT GCTCATTACA
  CAGCAAGCGG AACAGGAGCG TCCTTAAATC CTTTCCTGCA GTCACCAAGC CCACGCTCTG
  TTAAAATGAC ATTTCGTGGT TCCTACTTTA TTTTCCCCCA AGAGCTGTGA GTTCCCTATC
  AGGCCTGATT AAATTTTACA AAGTCAAAAA GAAAAGCCAG ATTTGCCCTC TCAGTGAGCT
  M
  ACTCGCAGAT CGTTGGTAGA ACAGAAATGC CCAGAAAATA ACAACCAGAA CCGGGCATTT
  GGTCCATAAT TACCATCACT ACCAGTTTCG GAGCTTTCTG GAATTACATT CCTCCGGTAA
  CTGTTGATGA TGCTCTCAAG AGGCAAAATG CAAGGCAGTT TTTCTCTTCC GCGGCTATAT
  TAGGGCTTTG TTGCTGACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367847422	MGP_WTSI_6_31168889	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218772415					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367847422	MGP_WTSI_6_31168889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31195824 () rs orientation: forward

Symbol	Name	Function Class
2210408F21Rik	RIKEN cDNA 2210408F21 gene	1462 bp upstream
Cpgi17266	CpG island 17266	1476 bp distal
Cpgi17267	CpG island 17267	98 bp distal
Cpgi17268	CpG island 17268	1409 bp proximal
Gm67814	predicted gene, 67814	1324 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	415 bp upstream
Rr379139	regulatory region 379139	within coordinates
Tssr55456	transcription start site region 55456	1953 bp downstream
Tssr55457	transcription start site region 55457	1926 bp downstream
Tssr55458	transcription start site region 55458	1454 bp upstream
Tssr55459	transcription start site region 55459	1511 bp upstream
Tssr55460	transcription start site region 55460	1543 bp upstream
Tssr60177	transcription start site region 60177	1365 bp upstream
Tssr60178	transcription start site region 60178	1221 bp upstream
Tssr60179	transcription start site region 60179	502 bp upstream
Tssr60180	transcription start site region 60180	449 bp upstream
Tssr60181	transcription start site region 60181	424 bp upstream
Tssr60182	transcription start site region 60182	404 bp upstream
Tssr60183	transcription start site region 60183	175 bp upstream
Tssr60184	transcription start site region 60184	145 bp downstream
Tssr60185	transcription start site region 60185	1348 bp downstream
Tssr60186	transcription start site region 60186	1398 bp downstream
Tssr60187	transcription start site region 60187	1410 bp downstream