rs218777681 SNP Detail

Summary

• ID
  rs218777681
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTATGAA GAGAGCCTAT
  GAGAGACTAG TGGTGAAGCT TAGTTGTAGA GTAAGATCCC AATGTATTAG ATGCCAGTGC
  AATGTGATGA CCACCAAGAA TAGAAGCAAC AGTGGAGTGG AGTGAACTAG AGCCTAGAGT
  TCTTCAAAGG GCAGAGCTGG AGAAGCTACC CAAGTCCTTT GGAGGAGTCT AAAATAACAT
  S
  TTTGGATCTC AAATAGTGGA ACAAGAAGCT ATGAAGTTGA AGTTACCTTG AAGTCCCCAA
  GATGTTAGAG GTGTCAGAGC TGTGGAATAC TTGCTAAGAA AAGCTGCTAA TAGAAAGTGG
  AACAAGCCCA AGAAAGAATT GTGTTATAGT CAACAAAGCT AAAAGGAGCT GGGAATCAGA
  CATGGAGATG CAGAATTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084842	CHEV_4_35954467	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218777681					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007434 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	1427 bp upstream