rs218794816 SNP Detail

Summary

• ID
  rs218794816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135146206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACCTCA GTTCGCTAAA
  ATGTGGTGAC GAAGTCTGTT CAGAAGCTTA ACCAAATCTG GGCAGTTACA CAAGAGTAAG
  TAGGGTTGGG AGGAGGTGGA CCGACACTGT TGCCACTTCC TGTGTTGTGT GGTCGCTGCT
  CTCACCCGAA GCTATTTATC TGAGGCACTG GGAACCCTGT AAAAGCCTTC TGAAAGATCC
  Y
  GGGGGGAGTG GGGGTTGACA GTGCAGGGAA ACTGGATGGG GAGACTGTTT TTGCTTAAAA
  CCCATCTTTA AGGAGGCTTG TTTGAGCAAA TCGATATAGT TTGATAAGTT GTCAATTTAA
  GTTGGCAAGA ACTAGAATTT TTTTCAGAAA TATTTTGCGA GTGGATCCAC CTCTCCGGTG
  GTTTAGTCTC ATTTTCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359834803	MGP_WTSI_3_135103409	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218794816					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834803	MGP_WTSI_3_135103409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135146206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1780 bp upstream
Cpgi13855	CpG island 13855			793 bp distal
Rr398041	regulatory region 398041			within coordinates
Rr585710	regulatory region 585710			1870 bp distal
Rr585711	regulatory region 585711			1224 bp distal
Rr585712	regulatory region 585712			1079 bp distal
Rr585713	regulatory region 585713			578 bp distal
Rr585714	regulatory region 585714			423 bp proximal
Tssr1058	transcription start site region 1058			169 bp upstream
Tssr31813	transcription start site region 31813			1993 bp downstream
Tssr31814	transcription start site region 31814			1960 bp downstream
Tssr31815	transcription start site region 31815			1905 bp downstream
Tssr31816	transcription start site region 31816			1861 bp downstream
Tssr31817	transcription start site region 31817			1665 bp downstream
Tssr31818	transcription start site region 31818			1392 bp downstream
Tssr31819	transcription start site region 31819			1382 bp downstream
Tssr31820	transcription start site region 31820			1347 bp downstream
Tssr31821	transcription start site region 31821			1271 bp downstream
Tssr31822	transcription start site region 31822			1005 bp downstream
Tssr31823	transcription start site region 31823			976 bp downstream
Tssr31824	transcription start site region 31824			945 bp downstream
Tssr35783	transcription start site region 35783			1807 bp upstream
Tssr35784	transcription start site region 35784			1740 bp upstream
Tssr35785	transcription start site region 35785			69 bp upstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant