rs218797516 SNP Detail

Summary

• ID
  rs218797516
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:58180218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCAGGG ATCAAACAGG
  TAATGGCCTG GCATCGTCGC TGTGGCTGCT GCTCTGGGCG CGGCACCGTC GCAGCACAGG
  AATTCAGTCG CTGCAGGCAC CCTCCAGAAG AGCGCGACAG CCTGGCGGAG GCCCCCTCCC
  TGTCTCGGCG GCCCCTCCCT CCCGGAACCC AGCTACTGGC TCCCGCCCGC CCGCCGCCCC
  C
  GACCGCCCCA CCCCCCGGGT GCAGAGTCCC CGCTCCCACG AACACCTGTA GAAGATCAAG
  ACACTGCCCC GTTGCCCAAA GCCCTCTTTC CTTTTCCCTA AAAGAGGCTT AGGGAGAAAC
  AGTGATGGAG GAGGCACTTA GGGTGAGATA GTTGCCTTGC AGGAGCTGGG CTGTGCTGGG
  CTTTGGGGCT GGGAGAAGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss403554883	MGP_WTSI_X_56388035	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs218797516					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403554883	MGP_WTSI_X_56388035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:58180218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22738	CpG island 22738	20 bp distal
Fgf13	fibroblast growth factor 13	within coordinates
Rr4369	regulatory region 4369	383 bp proximal
Rr8657	regulatory region 8657	within coordinates
Tssr163463	transcription start site region 163463	483 bp upstream
Tssr163464	transcription start site region 163464	466 bp upstream
Tssr163465	transcription start site region 163465	438 bp upstream
Tssr163466	transcription start site region 163466	413 bp upstream
Tssr163467	transcription start site region 163467	141 bp upstream
Tssr163468	transcription start site region 163468	73 bp upstream