rs218799459 SNP Detail

Summary

• ID
  rs218799459
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49339821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTGCC CAGGTATCTT
  TTTTGTTTTT GGGACAGCGT TTCTCTATGT AGCTCTGGCT GTTCTGGAAC TTGCTCTGTA
  GACCAGGCTG GCCTCGAACT CAGACATACA CCTGTCTCTG CCTCCAAGTG CTGGGATTAA
  AGGCTTGTGC CACCACCTCT ACCACCAGGC TGGCTCCATT TCTTATTTCT AATCCTCTTC
  M
  TTCTGGATGT GAGACAGGGG ACAGAGGGTC CGCAGGTTCA CTTGGCCTTT AGCAAACTCC
  AGCCTTATGC TAAGACACAA GCTGGCAAGA AGGGTCATAA AGAGAAGGTG AACCACTCCA
  TCAAGGAACG GTAGTTCTGA GCCCCAGCTT GTAATCTCCC TAAGAGTCTC ATCGTCCTTA
  TTCCTTCTGA GACTCTAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388559500	MGP_WTSI_13_49281714	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218799459					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388559500	MGP_WTSI_13_49281714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49339821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5580	CpG island 5580	474 bp proximal
Ninj1	ninjurin 1	1184 bp upstream
Rr479364	regulatory region 479364	650 bp proximal
Rr479365	regulatory region 479365	1191 bp proximal
Tssr119678	transcription start site region 119678	1140 bp upstream
Tssr119679	transcription start site region 119679	1811 bp upstream
Tssr119680	transcription start site region 119680	1857 bp upstream
Tssr119681	transcription start site region 119681	1900 bp upstream
Tssr122445	transcription start site region 122445	1568 bp downstream
Tssr122446	transcription start site region 122446	1593 bp downstream
Tssr122447	transcription start site region 122447	1608 bp downstream
Tssr122448	transcription start site region 122448	1652 bp downstream
Tssr122449	transcription start site region 122449	1668 bp downstream