rs218799988 SNP Detail

Summary

• ID
  rs218799988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109720946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCTCATT ATCTGAGTTT
  CGCGCTGGGC AAGGTCCAGA GCTCGGTCAC TGTTTCCGGC TCGGACCGCG ACTATAGAAC
  GTGACTGGAC ACAGCCACGC CCAGAACGCC CCAGGGGTCG GGCCTCAGAA CCTGGGGTTG
  GACCAGGCTT CTAGGCGTCC CCAAAGGCTG CACGGTGTCC GGATGCTTCT GAACCCGGAG
  W
  CAGGGAGGCC GACCCAAGGC CAGCACTGGG CAGTAGCCGC CGTCCTCTCG CCCCTCCTCG
  CAGGGCGGCT CCCGGCAGGC TCCGGTCCTC TAAACATAGA CTCTGGGTGG GGTTCTGTGC
  AATCCAGGCC CACTCATTGG CCCGGGATGC CGCGACCCGC CCACGACTGG CGGCGCGCCT
  AGGCTGTGGG GCGGAGTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372699465	MGP_WTSI_7_117265253	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218799988					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372699465	MGP_WTSI_7_117265253	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109720946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
D7Wsu130e	DNA segment, Chr 7, Wayne State University 130, expressed	1722 bp distal
Gm45819	predicted gene 45819	within coordinates
Rr400541	regulatory region 400541	33 bp upstream
Rr653190	regulatory region 653190	within coordinates
Tssr68487	transcription start site region 68487	294 bp upstream
Tssr68488	transcription start site region 68488	514 bp upstream
Tssr68489	transcription start site region 68489	560 bp upstream
Tssr68490	transcription start site region 68490	768 bp upstream
Tssr68491	transcription start site region 68491	980 bp upstream
Tssr74248	transcription start site region 74248	1407 bp upstream
Tssr74249	transcription start site region 74249	146 bp upstream
Tssr74250	transcription start site region 74250	1151 bp downstream
Tssr74251	transcription start site region 74251	1180 bp downstream
Tssr74252	transcription start site region 74252	1262 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	320 bp upstream