rs218801589 SNP Detail

Summary

• ID
  rs218801589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110676092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATCTTA CCTGGCTTTT
  CATAAACTTG CCCCCCATCT CTCCAAACTG CGATTGCGTG GGAGGCATGA TGTGCCCCCC
  ATGGCCATTG AAGAGCTGAT TTGAACGATG ACGTCCCATT GTGGGTGAAA ATCTATCCTG
  GATAACTCCT GGACCAGTAC CAATTCCACT ACCTTAAAAT ACAGACAACT CTTAGAAATT
  Y
  ACTAAAATAT TAACTTTTGG TTTATCCAAA ACACTGCTGC TTTTAAAATT ACCTGGCATT
  TGTCCAAACA TATCAGCAAG TCCCCCAAGT GGGTCCCTAT CCATTTTCAT CCTTGGCGGC
  ATGAACGGTC CCTCCAGGAA GAAGTCATTC CTCCCTTGAG CCATAGGAGC AGGAATAAAC
  ACTCCTAGAT CCTTTGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401255	CHEV_7_118220399	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218801589					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110676092 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm23262	predicted gene, 23262	658 bp upstream
Tssr74286	transcription start site region 74286	1216 bp upstream
Tssr74287	transcription start site region 74287	709 bp upstream
Tssr74288	transcription start site region 74288	691 bp upstream
Tssr74289	transcription start site region 74289	654 bp upstream
Tssr74290	transcription start site region 74290	487 bp upstream
Tssr74291	transcription start site region 74291	1236 bp downstream
Tssr74292	transcription start site region 74292	1619 bp downstream
Tssr74293	transcription start site region 74293	1671 bp downstream