rs218807254 SNP Detail

Summary

• ID
  rs218807254
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATAAAAC AACTTTTATG
  TTATCTGGGA TTGAACTCAG AATCTTGTAC ATGATAAGCC CAGTACCACT GAGCCACACC
  CCAGCTCCTC ACTGGGGGAT TCTAGGCAGG GGCTCTACCA CTGAGCCACA CCCCAGCCCC
  TCACTGGAGG ATTCTAGGCA GGGGCGCTAC CACTGAGCCA CGCCCCCAGC CCCTCACTGG
  A
  GGATTCTAGG CAGGGGCTGT ACCACTGAGC CACGCCCCCA GCCCCTCACT GGAGGATTCT
  AGGCAGGGGC TGTACCACTG AGCCACGCCC CCAGCCCCTC ACTGGAGGAT TCTAGGTAGG
  GGCTCTACCA CTGAGCCATG CCTTCAGCAT CACTAATCAT TAACTGAAGA AATTACAAGA
  AGTACTCTAA ATTATATTAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	FVB/NJ	SWR/J
ss370920932	MGP_WTSI_7_31823444	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	FVB/NJ	SWR/J
rs218807254					SNP	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920932	MGP_WTSI_7_31823444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737850 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1112 bp downstream
Mir7050	microRNA 7050	1833 bp downstream
Rr644981	regulatory region 644981	1426 bp distal
Rr644982	regulatory region 644982	1130 bp distal
Rr644983	regulatory region 644983	1919 bp proximal
Tssr65831	transcription start site region 65831	1417 bp downstream
Tssr65832	transcription start site region 65832	1008 bp downstream
Tssr65833	transcription start site region 65833	569 bp downstream
Tssr65834	transcription start site region 65834	538 bp downstream
Tssr71891	transcription start site region 71891	1926 bp upstream
Tssr71892	transcription start site region 71892	1331 bp upstream
Tssr71893	transcription start site region 71893	558 bp upstream
Tssr71894	transcription start site region 71894	535 bp upstream
Tssr71895	transcription start site region 71895	506 bp upstream
Tssr71896	transcription start site region 71896	476 bp upstream
Tssr71897	transcription start site region 71897	634 bp downstream
Tssr71898	transcription start site region 71898	1783 bp downstream