rs218807659 SNP Detail

Summary

• ID
  rs218807659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA GCACTTGGGA GGCAGAGGCA
  R
  GCAGAGCTCT GTGAGCTTGA GGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471182	CHEV_7_149567846	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218807659					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935678 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	419 bp downstream
Rr658151	regulatory region 658151	378 bp distal
Tssr70137	transcription start site region 70137	1143 bp downstream
Tssr70138	transcription start site region 70138	1095 bp downstream
Tssr70139	transcription start site region 70139	1076 bp downstream
Tssr70140	transcription start site region 70140	1049 bp downstream
Tssr70141	transcription start site region 70141	1028 bp downstream
Tssr70142	transcription start site region 70142	981 bp downstream
Tssr70143	transcription start site region 70143	683 bp upstream
Tssr70144	transcription start site region 70144	1485 bp upstream
Tssr75774	transcription start site region 75774	1132 bp upstream
Tssr75775	transcription start site region 75775	1127 bp upstream
Tssr75776	transcription start site region 75776	1106 bp upstream
Tssr75777	transcription start site region 75777	1055 bp upstream
Tssr75778	transcription start site region 75778	1042 bp upstream
Tssr75779	transcription start site region 75779	1007 bp upstream
Tssr75780	transcription start site region 75780	991 bp upstream
Tssr75781	transcription start site region 75781	973 bp upstream
Tssr75782	transcription start site region 75782	945 bp upstream
Tssr75783	transcription start site region 75783	675 bp downstream
Tssr75784	transcription start site region 75784	1508 bp downstream
Tssr75785	transcription start site region 75785	1528 bp downstream
Tssr75786	transcription start site region 75786	1558 bp downstream