rs218827414 SNP Detail

Summary

• ID
  rs218827414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129007247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCGGAA TTAAGATGAG
  AAAGGTGATT TGCTGATGTT TTTAACTTTA GCTTTAGGTA GCACATCGCC TTTCTGTCCT
  GACCTGGGGT GTGGAAGTTG GGGGGGGGGG GGGCTGGTCT AGAAATGGAT GTAGTGAGAC
  ACAAAAGGAA GAGAGGGGGT GCTTGCTGGC TAAACCTATA CCTCTCAGTC TTAGACTTTC
  Y
  TGCTTCTTTA CCCTAACCCT CTGATTCCAA GTCTCCTCTC CCCCACCTTA TAGTCCTAAC
  CAAAAGCCGA ATAGCCTTTG GCTGGGCAGG AGCAGAATTC CCAGGAGCGC GCCTGTGTAG
  ACCGGGTGGG CACAGCAAGG AATTAGTTGG GCCTCGCACT GCTGATAGGT GCAGACAGAA
  CCATCCCTCT GCCGCGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359681559	MGP_WTSI_3_128916516	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218827414					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359681559	MGP_WTSI_3_128916516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129007247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13808	CpG island 13808	within coordinates
Cpgi13809	CpG island 13809	1693 bp proximal
Gm27195	predicted gene 27195	1803 bp downstream
Pitx2	paired-like homeodomain transcription factor 2	Intron
Rr584970	regulatory region 584970	766 bp distal
Rr584971	regulatory region 584971	within coordinates
Tssr31631	transcription start site region 31631	322 bp upstream
Tssr31632	transcription start site region 31632	352 bp upstream
Tssr31633	transcription start site region 31633	671 bp upstream
Tssr31634	transcription start site region 31634	1878 bp upstream
Tssr31635	transcription start site region 31635	1917 bp upstream