rs218833299 SNP Detail

Summary

• ID
  rs218833299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100975638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTGGGAG GGATAGCTCT GCAGAGTCCA
  AGAGGAACAA TTATCATGAC AGAAGTCAGC ATTAGCCATC TCAGAGCAAT ACGCAGTTCA
  GATGGCCTGC CTCAGCTCCC TTCATCCTCA TTCACTCCTC TCAGAGAGGG CCAGGAATAT
  S
  CAGAGCACAG GAGGAAGGGC TGGCTCTAAC CCTTGCACCT CTTGGGAATT CGACGTCCAT
  TTTCCTACAC ACATTTTCCT GATTCCTCCA TGCTAGTTTG GTTCCTGAAT GCATGAGTAC
  TCCTACGTCC TAGCTGGCTA ACAAGTTGGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850782	CHEV_3_100872245	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218833299					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100975638 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581950	regulatory region 581950			1762 bp distal
Rr581951	regulatory region 581951			185 bp proximal
Rr581952	regulatory region 581952			1850 bp proximal