rs218834559 SNP Detail

Summary

• ID
  rs218834559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74918464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT CCCACCCATT CCGTTGGCGA
  R
  GATCGCCCGG GAGCCGAGCC TCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325896890	CHEV_X_73120197	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218834559					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74918464 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	within coordinates
Rr692140	regulatory region 692140	295 bp distal
Rr692141	regulatory region 692141	within coordinates
Rr692142	regulatory region 692142	314 bp proximal
Tssr163681	transcription start site region 163681	325 bp upstream
Tssr163682	transcription start site region 163682	268 bp upstream
Tssr163683	transcription start site region 163683	243 bp downstream