rs218839587 SNP Detail

Summary

• ID
  rs218839587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166904645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGCG GGACGCCGGC
  GGTCGCAGCG CCGCAGAAGC AGGTGCGTGA TAGGGCGGAG GCCACTCACC GGCTCGGGCG
  CGTCCTCCGC AGGGCTAGAG CTCAGCCCCG GCCCTGGCAG GTCGCGGCCC CGCCCGGCAC
  CGCGAACTTT CGGTTTCCAG TCCCTGCAGC CCCTGGGCGG GGCGAGTAGC CTAGTGGGCG
  R
  CCCGGAGGAA GAGGAGGCCG CGCAGGACGA GGAGGCGGTG CCGCGGGCTC CAGCGAGAGG
  CCGGGCTCGC CTGCGCCCCC GCCCTCGGGG CGGGCGGAAG GGCGGCGTCG CCTCAGCGCC
  CGCGGTAGCG GCGGCGGCTG GACTGGCGGC TCCCCGCGGG CGCGGCGGAG GGGAGGGCGC
  GGCGGGGGGC GGGTTGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497152	MGP_WTSI_2_166888225	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218839587					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497152	MGP_WTSI_2_166888225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166904645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm25878	predicted gene, 25878	748 bp upstream
Gm56406	predicted gene, 56406	291 bp upstream
Gm75600	predicted gene, 75600	1612 bp downstream
Rr397500	regulatory region 397500	405 bp upstream
Rr570438	regulatory region 570438	1951 bp distal
Rr570439	regulatory region 570439	835 bp distal
Rr570440	regulatory region 570440	within coordinates
Rr570441	regulatory region 570441	280 bp proximal
Rr570442	regulatory region 570442	1630 bp proximal
Rr570443	regulatory region 570443	1833 bp proximal
Rr570444	regulatory region 570444	1897 bp proximal
Tssr21787	transcription start site region 21787	1436 bp downstream
Tssr21788	transcription start site region 21788	1423 bp downstream
Tssr21789	transcription start site region 21789	90 bp upstream
Tssr21790	transcription start site region 21790	488 bp upstream
Tssr27736	transcription start site region 27736	1889 bp upstream
Tssr27737	transcription start site region 27737	1878 bp upstream
Tssr27738	transcription start site region 27738	1833 bp upstream
Tssr27739	transcription start site region 27739	1649 bp upstream
Tssr27740	transcription start site region 27740	120 bp upstream
Tssr27741	transcription start site region 27741	1 bp upstream
Tssr27742	transcription start site region 27742	7 bp downstream
Tssr27743	transcription start site region 27743	139 bp downstream
Tssr27744	transcription start site region 27744	256 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	209 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	mRNA-UTR