rs218859210 SNP Detail

Summary

• ID
  rs218859210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119703210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCATTT GGGGCACTGT
  GATAGAATCT ACTGAGCGCA GGTTTATAAG AACACTAGGT TAGCTGCAAG GAGATCCTAT
  GCTTTCCAAC CCAGAAAGGT GTTCTAGGAG ACATGAAATA AGAATAATAT ATTAATATAG
  AATAATATTT TTATTTGAAA ACTCAGCCGG GGTTAAAAGC ATATCTAATT TGATTCATTG
  Y
  CATAATGAAA AATGCATAAA CGACGTGAGA AAGGGACTGT CTTATACATT CCAGGCTGTT
  GTTGAATCAC AGAAAATAAT TGTGCCAAGG CCTCGGGGAC AGGTCTTGTT AGTGAAGACC
  TCACCACACA TAAATAAAGT GTGGCATTGT ACAAGGTTCT TGGGAGCCAA AGAAAGAAGA
  AAAAGCACCC CAAGCCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372928636	MGP_WTSI_7_127247501	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218859210					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372928636	MGP_WTSI_7_127247501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119703210 () rs orientation: forward

Symbol	Name	Function Class
4930560O18Rik	RIKEN cDNA 4930560O18 gene	782 bp upstream
Cpgi19639	CpG island 19639	695 bp distal
Gm74015	predicted gene, 74015	800 bp upstream
Ldaf1	lipid droplet assembly factor 1	within coordinates
Rr153276	regulatory region 153276	991 bp proximal
Rr153277	regulatory region 153277	1991 bp proximal
Rr166602	regulatory region 166602	209 bp distal
Rr381391	regulatory region 381391	930 bp downstream
Tssr68768	transcription start site region 68768	1629 bp downstream
Tssr68769	transcription start site region 68769	1556 bp downstream
Tssr68770	transcription start site region 68770	1523 bp downstream
Tssr74514	transcription start site region 74514	762 bp upstream