rs218865250 SNP Detail

Summary

• ID
  rs218865250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81319285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGGCTA TATATTGTCT
  TCCAGGCCAG CTAGAAGTAG GCCAAGGGAC CTTGTCTCAA AACTCAATAG GTAATATTTT
  ATACATAGCA TTTTTGTGTG TTCATTTTTA TTGAATATTT TTTTTACATT TCAAATGATA
  TCCCCCCTTT CCCGATCCCC CCCCCAAACC TCCTATCCCA TTCCCCTCCT CCTGCTTCTA
  K
  GAGGGCATGC CCCACCCACC CACCCGCCTT TGCATTCCCT TACACTGGGG CATCGAGCCT
  TCACAGGACC AAGGGCCTCT TTTCCCATTG TTTTCCAACA AGGCTGTCCT CTGCTACGTA
  TGTGGCTGGA GCCATGGGTC CCTCCATGTG TACTTCTTGG TTGGTGGTTT AGACCCTGGG
  AACTCTGGGT TGTTGATAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036804	MGP_WTSI_10_80946196	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218865250					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036804	MGP_WTSI_10_80946196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81319285 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	742 bp upstream
Cpgi1992	CpG island 1992	350 bp distal
Rr435679	regulatory region 435679	778 bp distal
Rr435680	regulatory region 435680	252 bp distal
Rr435681	regulatory region 435681	552 bp proximal
Rr435682	regulatory region 435682	1005 bp proximal
Rr435683	regulatory region 435683	1547 bp proximal
Tssr98622	transcription start site region 98622	1338 bp upstream
Tssr98623	transcription start site region 98623	1301 bp upstream
Tssr98624	transcription start site region 98624	1098 bp upstream
Tssr98625	transcription start site region 98625	807 bp upstream
Tssr98626	transcription start site region 98626	798 bp upstream
Tssr98627	transcription start site region 98627	726 bp upstream