rs218866509 SNP Detail

Summary

• ID
  rs218866509
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTTCAG GAGCTGTTCA
  GTGGTGGCTC CCGATGGGTT TGAAGCCATA CATTAAGCCA AGCCCTGGGA AACCAAGCGT
  TGATGCTCCT GATCTGTTTC TGGCGATTGC CAGATGTGTC ACCTTGGGAG GGAAGAGCTA
  CCCCTACAGA GCACATTTTA AAAAGTTGTT TTGAGATAAG ATTCTCAGGC TGCCCTCTAA
  M
  CCACAAAGGT CCTTCTGCCT CTGCTGTAGC ATGCTGGGAC TGCAGGTGTG CACCCCTGCA
  TGTGCATTTT CCACTCTCAA GCCACTTCTC TTTTCTTTTT CCTCATAAAA GCAGAAGAGC
  AGGAGCTGGA GAGATGACTC AGAGGTTAGG AGCACTGACT GCATTTCACA GGACCTAGGT
  TCAAAATCGC AGCACCCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754844	MGP_WTSI_7_20285033	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218866509					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754844	MGP_WTSI_7_20285033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433609 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	883 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1765 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	787 bp distal
Rr643243	regulatory region 643243	1388 bp distal
Rr643244	regulatory region 643244	6 bp distal
Rr643245	regulatory region 643245	646 bp proximal
Rr643246	regulatory region 643246	1572 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1629 bp downstream
Tssr64897	transcription start site region 64897	1625 bp upstream
Tssr71005	transcription start site region 71005	1686 bp upstream
Tssr71006	transcription start site region 71006	1653 bp upstream
Tssr71007	transcription start site region 71007	1591 bp upstream
Tssr71008	transcription start site region 71008	1485 bp upstream
Tssr71009	transcription start site region 71009	1423 bp upstream
Tssr71010	transcription start site region 71010	1303 bp upstream
Tssr71011	transcription start site region 71011	1279 bp upstream
Tssr71012	transcription start site region 71012	1249 bp upstream
Tssr71013	transcription start site region 71013	621 bp upstream
Tssr71014	transcription start site region 71014	77 bp upstream
Tssr71015	transcription start site region 71015	35 bp downstream
Tssr71016	transcription start site region 71016	271 bp downstream
Tssr71017	transcription start site region 71017	720 bp downstream
Tssr71018	transcription start site region 71018	761 bp downstream