rs218872178 SNP Detail

Summary

• ID
  rs218872178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58989887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACAATA AGTACCAAGG
  AGATTCATTT TCCAAGCAAG TTGCCATATT AACATTTCTT AGGCTATATT TTATAGCATA
  AAAGCCAAAA CATGCCACCC AATTAAAATT CAGAATGTAA ATTAGATATA TAGAGCTTGC
  ATACACAATA ATCTGCTTCT CACAACAAAA TATTTGTAAT GTAAAATTCC TATCAGCTTT
  Y
  CCCACAAAAT ATAACAAGGA AAATTAATAT CCCTTATTGT GAAGGGAGAT AGTATAATAT
  TTTTTTCTTT TTACTAAAGA GGATATTATG AAAATAACAA AGCCACCAAA AGAAGAAACA
  TGAATACATC GGTGGCTATA TGCTAGAGTG GTACTATTTT TAAAATATGT TATGAAGCAA
  TATCATGTGT AAAAGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354128796	MGP_WTSI_2_58997600	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218872178					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354128796	MGP_WTSI_2_58997600	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58989887 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	within coordinates
Cpgi11668	CpG island 11668	922 bp proximal
Pkp4	plakophilin 4	1307 bp upstream
Rr56883	regulatory region 56883	313 bp proximal
Rr396983	regulatory region 396983	996 bp upstream
Tssr17838	transcription start site region 17838	804 bp upstream
Tssr17839	transcription start site region 17839	1249 bp upstream
Tssr17840	transcription start site region 17840	1295 bp upstream
Tssr17841	transcription start site region 17841	1341 bp upstream
Tssr17842	transcription start site region 17842	1488 bp upstream
Tssr24158	transcription start site region 24158	1081 bp downstream
Tssr24159	transcription start site region 24159	1101 bp downstream