rs218875536 SNP Detail

Summary

• ID
  rs218875536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36661566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGGGTTGG CCCCAGGCAC TAGAGTGGCG
  AGAGACAGGC AGGTAAGTGG GTCCTGGTTA GCTTCCTTCC TGCCTCAAAT TAGGACTTTT
  CCTTTGTGTT CTTGCCATGA GACTCAGTTT CCTCTACAAT ATGAGTTCTC TGAGACCTAA
  Y
  GAGGAGTGGC TGACTGCTCA GGGAAGGAGG TCCTCTGTAT CACTGGGTCA ATGGCAGCCA
  CATTGCCCTA CCTGTGTTCC AGACATGGGC GAGAGTCTCC CAATAACACC GCCTATTCCT
  TCATCACAGG TGGCTGCTGT TCGAGGAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584600	CHEV_18_36688167	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218875536					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36661566 () rs orientation: forward

Symbol	Name	Function Class
Rr536158	regulatory region 536158	1931 bp distal
Rr536161	regulatory region 536161	346 bp distal
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	within coordinates
Tssr150628	transcription start site region 150628	359 bp downstream
Tssr150629	transcription start site region 150629	692 bp upstream
Tssr150630	transcription start site region 150630	710 bp upstream
Tssr150631	transcription start site region 150631	730 bp upstream