rs218876809 SNP Detail

Summary

• ID
  rs218876809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115168135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCCCCC AGAACGTCCA
  ATCCTCAAAA GCTTATCAAA TTTCTCCGGT CTTCCTAGTA CCTCCAGATG CCGGAAGTCT
  AGATTTGAAG AAACGCGAAT CCCCTATGCT GTTTCAGTTG CTCTTGAAGA AGGGAGCCAA
  TTGGAAAGGA GCTTACTTTA TGTAAAGCTT GCCGCTCGCT GATGACGCAA TGCCCCGTTG
  W
  CGTTGTTTGA GTGATTTTTG TATCAGCCAA TCAGAAGGCC AGAGCCCGGA AGTCTCGTGT
  ATCCGCTATT CTTGACTCCT CGATTTTTAA GTCTGGATGT TGAACTGATG TAGCCTCAAA
  CAGCTACTTG TGCGTGTCAG AGAAGGACAA GTGTTAAACT CTCAAGAGCT TATTTCTAGT
  CACCCTCTTC CCACGATGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862216	CHEV_11_115138623	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218876809					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115168135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4117	CpG island 4117	within coordinates
Fdxr	ferredoxin reductase	259 bp upstream
Gm74405	predicted gene, 74405	40 bp upstream
Rr246090	regulatory region 246090	within coordinates
Rr403113	regulatory region 403113	within coordinates
Tssr105852	transcription start site region 105852	112 bp upstream
Tssr111738	transcription start site region 111738	403 bp upstream
Tssr111739	transcription start site region 111739	366 bp upstream
Tssr111740	transcription start site region 111740	337 bp upstream
Tssr111741	transcription start site region 111741	325 bp upstream