rs218878374 SNP Detail

Summary

• ID
  rs218878374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190956409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTCCC TTCCCACAGT
  GCGACCTCTC CGAAACTGTT CTTGGCATGA CCGTGACCAC AGTGGATGGC TCAGGACTGA
  GAAGCAAGGC CTGCCTCGGG CAGCTCTGGC CCTAATGGGC CAGCCCAGGT CTCTTAAGCA
  CAGCCTCTCC AGTTCCAGAA AACTCATGGG TAGGCTCCAC AGGGCTGGGC CCTAGGTCAG
  Y
  CAAACTTTAG CACGAAAAAA ATGAAAATTC TGGAGCCAGC CCTATGGCAA TGATTAAGAG
  CTTGACGATG GTCAGCTCTG TGACCTGGAC AGCATACTTT TTGTTTGAGG TGACCGAACG
  GGTGCAGTGC GAGCTACGGC CCCTTTAAGA CAGCGAAACT CGAACTTTCT ATCCCGGCTT
  CTCGGCAGCG CGCTTACGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352828696	MGP_WTSI_1_193048091	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218878374					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352828696	MGP_WTSI_1_193048091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190956409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	within coordinates
D730003I15Rik	RIKEN cDNA D730003I15 gene	242 bp upstream
Gm70871	predicted gene, 70871	within coordinates
Rr26272	regulatory region 26272	1733 bp distal
Rr29193	regulatory region 29193	within coordinates
Rr396715	regulatory region 396715	within coordinates
Tssr372	transcription start site region 372	635 bp downstream
Tssr10744	transcription start site region 10744	231 bp upstream
Tssr10745	transcription start site region 10745	250 bp upstream
Tssr10746	transcription start site region 10746	834 bp upstream
Tssr10747	transcription start site region 10747	1228 bp upstream
Tssr15770	transcription start site region 15770	699 bp downstream
Tssr15771	transcription start site region 15771	764 bp downstream
Tssr15772	transcription start site region 15772	1047 bp downstream
Tssr15773	transcription start site region 15773	1060 bp downstream