rs218879970 SNP Detail

Summary

• ID
  rs218879970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTTCTG AGTACTGGGA
  TTGCAGGTGT GAGCTAACAC ACCTGGCTCA TACTTTTCAT TTATGGACTA AAATCAGATT
  CCAGCTTCAT CTGTAGGAAA GCTATTTGGT GACATCAAGC GTTCAGTTAC CAAAATGAAC
  AGAGTTGTGG TTGCATTGAA TGGTAACTGA CTTAAGTCTA GTCTATCAAT AATGGAACTT
  R
  TTAGAATAAA TTGGCTCTCT TCAGTAATCA GGCATGCTCT ATTCACTAAC TGCTCAGTCT
  CATCCTCTAC TGTGAGGTAA ACTCGGTGTA ACAGCCTCAT TTTTCACTAG AGCGCCTTGG
  TCTTTCTCCT TACTGAGGTA TCAGGAGGTG AGACTGAGCT GAGTAAGATG GCAGATGCTG
  ACTCGAGACC CCTGCCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315546	MGP_WTSI_2_113874622	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218879970					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315546	MGP_WTSI_2_113874622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879367 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1317 bp upstream
Tssr601	transcription start site region 601	1306 bp upstream
Tssr602	transcription start site region 602	1591 bp downstream
Tssr19429	transcription start site region 19429	1589 bp downstream
Tssr19430	transcription start site region 19430	1479 bp downstream
Tssr19431	transcription start site region 19431	1395 bp downstream
Tssr19432	transcription start site region 19432	1312 bp downstream
Tssr19433	transcription start site region 19433	722 bp downstream
Tssr19434	transcription start site region 19434	678 bp downstream
Tssr19435	transcription start site region 19435	283 bp upstream
Tssr19436	transcription start site region 19436	664 bp upstream
Tssr19437	transcription start site region 19437	1399 bp upstream
Tssr19438	transcription start site region 19438	1482 bp upstream
Tssr19439	transcription start site region 19439	1547 bp upstream
Tssr25660	transcription start site region 25660	1568 bp upstream
Tssr25661	transcription start site region 25661	1547 bp upstream
Tssr25662	transcription start site region 25662	1444 bp upstream
Tssr25663	transcription start site region 25663	1418 bp upstream
Tssr25664	transcription start site region 25664	1377 bp upstream
Tssr25665	transcription start site region 25665	1269 bp upstream
Tssr25666	transcription start site region 25666	715 bp upstream
Tssr25667	transcription start site region 25667	672 bp upstream
Tssr25668	transcription start site region 25668	645 bp upstream
Tssr25669	transcription start site region 25669	582 bp upstream
Tssr25670	transcription start site region 25670	315 bp downstream
Tssr25671	transcription start site region 25671	358 bp downstream
Tssr25672	transcription start site region 25672	427 bp downstream
Tssr25673	transcription start site region 25673	462 bp downstream
Tssr25674	transcription start site region 25674	666 bp downstream
Tssr25675	transcription start site region 25675	714 bp downstream
Tssr25676	transcription start site region 25676	751 bp downstream
Tssr25677	transcription start site region 25677	778 bp downstream
Tssr25678	transcription start site region 25678	1450 bp downstream
Tssr25679	transcription start site region 25679	1459 bp downstream
Tssr25680	transcription start site region 25680	1472 bp downstream
Tssr25681	transcription start site region 25681	1519 bp downstream
Tssr25682	transcription start site region 25682	1601 bp downstream
Tssr25683	transcription start site region 25683	1608 bp downstream
Tssr25684	transcription start site region 25684	1699 bp downstream