rs218891223 SNP Detail

Summary

• ID
  rs218891223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34691534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCCCT CACTCTGCTT
  TCCTTCTGGA GAGAATCAGG GCTAGGTTGG CTCTGCCATG TGCCCAACAT ATATTTAGAC
  AGCGAGTCCT TCTCAGAGCT CCAGAATGTG CCTTGGGCCT TTTGGTTTGG ATTACACCAA
  GAAGCCATGC TGGAAGGGTA TATTATCAAG AAAAAATGGA CTATCAGATG GTTTACATTG
  Y
  AGAAACCAAT TCATTTAGAC TAGAAATCAC ATTCTAAGTT CTTGGAGGGA TGTTTGAATT
  CTGTTTTTAA AAATGAGAGT CAAGGGGCTA AAAAGATGAC TCAAACAAAC CAACCAAGAC
  AAATTCTTTT GTTTTGTTCT TCTTTTTTTT TTCTTTAAGA TTTATTTATT TTACGTATAT
  GAATACACTG TTGCTATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353602500	MGP_WTSI_2_34657042	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218891223					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353602500	MGP_WTSI_2_34657042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34691534 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	131 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	796 bp upstream
Cpgi11557	CpG island 11557	1558 bp distal
Cpgi11558	CpG island 11558	613 bp proximal
Gm57450	predicted gene, 57450	756 bp upstream
Gm75753	predicted gene, 75753	1221 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1610 bp upstream
Rr373029	regulatory region 373029	within coordinates
Rr555526	regulatory region 555526	1915 bp distal
Rr555527	regulatory region 555527	1211 bp distal
Rr555528	regulatory region 555528	299 bp distal
Rr555529	regulatory region 555529	205 bp proximal
Rr555530	regulatory region 555530	266 bp proximal
Rr555531	regulatory region 555531	828 bp proximal
Rr555532	regulatory region 555532	988 bp proximal
Tssr17430	transcription start site region 17430	814 bp upstream
Tssr23651	transcription start site region 23651	1796 bp upstream
Tssr23652	transcription start site region 23652	1696 bp upstream
Tssr23653	transcription start site region 23653	1638 bp upstream