rs218897119 SNP Detail

Summary

• ID
  rs218897119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87972751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTTGGCT AGTGATGAAG AGTGGGCTAA
  TACTTCAAAG TATTGGTACC AAAGTTCAGG GACAtatttt attttacttt aacttatttt
  aattttattt tTACACTTTT Ttgtttctat gagggtgctc tcccacccat tcaaccactc
  Y
  agcctcactg ggccatcgag cctccatagg accaaggggc tcctttcatt gatgccagat
  aagaccatcc tctgctacat aggtagctgg agccatgggt ccctccatgt atactctttg
  gtttgtggtt tagtccttgg gaactctggg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321600573	CHEV_5_88253917	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218897119					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87972751 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	471 bp downstream
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	805 bp upstream
Rr378252	regulatory region 378252	1196 bp downstream
Tssr46931	transcription start site region 46931	783 bp upstream
Tssr46932	transcription start site region 46932	867 bp upstream