rs218901027 SNP Detail

Summary

• ID
  rs218901027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12769759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTAGGTG GACCCGATGT
  AACCACCTCT CATGGAGCGC TGCACATTTT GTTCAAACAG CCGCCGGTTG TTCTGCAGGA
  CCTCAGCAGC CTCCTTGTTC AGTGGGTCCT CAGGGTTCGG CTCCTGTGGC CGGTACAAGT
  GGAAGTCAAC AGGCAAGAGA GAGGCAGATG GCCAACAAAC CCTCAGCTTC AAATGCCTAA
  Y
  CCTACTTACC AAGAAGAGAT ACTGCAGGCC ATAAATTATG GAGTTTATCG TAAGGACTGG
  CTTCCAGTCC TCTCTGTGGG CAGAGAGCAT CAAGGTTATC AGGGGCTGGT GAGTGGGAGG
  CTGCTACAGG CCCTGCTAAT ACTGAACAGG TTAGGCCCAT AGAAGGCCTT TTAACATTGA
  AGTGTGAGAT CTAAGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370654961	MGP_WTSI_7_13621181	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218901027					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654961	MGP_WTSI_7_13621181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12769759 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	1055 bp upstream
Cpgi18334	CpG island 18334	713 bp distal
Cpgi18335	CpG island 18335	1507 bp proximal
Rr368233	regulatory region 368233	888 bp downstream
Tssr64534	transcription start site region 64534	953 bp downstream
Tssr64535	transcription start site region 64535	1842 bp upstream
Tssr70642	transcription start site region 70642	1867 bp upstream
Tssr70643	transcription start site region 70643	1796 bp upstream
Tssr70644	transcription start site region 70644	1686 bp upstream
Tssr70645	transcription start site region 70645	1418 bp upstream
Tssr70646	transcription start site region 70646	1159 bp upstream
Tssr70647	transcription start site region 70647	1118 bp upstream
Tssr70648	transcription start site region 70648	1050 bp upstream
Tssr70649	transcription start site region 70649	366 bp upstream
Tssr70650	transcription start site region 70650	297 bp upstream
Tssr70651	transcription start site region 70651	792 bp downstream
Tssr70652	transcription start site region 70652	1827 bp downstream
Tssr70653	transcription start site region 70653	1852 bp downstream
Tssr70654	transcription start site region 70654	1989 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates