rs218912183 SNP Detail

Summary

• ID
  rs218912183
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45455241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCCCCC CCACCAACTT
  CGTTTTAGTT AGCTAAGGAG AGTGATGAAA AGAAATGTGG AGTTTGTGAG TTTGGGGATA
  CTTTTTTTTT TTTTTTTGAA AAGTTTTATT CTTTATGATT CTGAGTAGAG AAAATTTGTG
  GCAACTGTTT CTGAGTATAT ATATATATAT ATATATATAT ATATATTAAT TTGTTACTTT
  S
  CTAGACTGAA ACAATTTAGA ACAATCTAGT TTTAGGAAGT AAACGTCAGC TTCAACTTTT
  TCTTTATTTC CTCTGTGAAT CTTTTCACTA GGGGCTGCTT TCACATATTT CCTGATGTCA
  TGCTATCTAT TGGTAACAGC TGATGAGGGC TGTGTGCGTA GGTTATTAAC ATTGCTATTT
  GTATTGTTAA CTTATATCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380241454	MGP_WTSI_10_45298951	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs218912183					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380241454	MGP_WTSI_10_45298951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45455241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	285 bp distal
Gm3805	predicted gene 3805	1034 bp upstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	within coordinates
Rr224766	regulatory region 224766	40 bp distal
Rr224767	regulatory region 224767	359 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates
Tssr93194	transcription start site region 93194	1231 bp downstream
Tssr93195	transcription start site region 93195	1217 bp downstream
Tssr97528	transcription start site region 97528	1034 bp upstream
Tssr97529	transcription start site region 97529	1018 bp upstream