rs218915554 SNP Detail

Summary

• ID
  rs218915554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCCTCTT CCTCTTCTTC CTCTTCTTCC TCTTCTTCCT
  CTTCCTCTTC TTCTTCTTCC TTCTCCTTCT CTTACTCCTC CTCCTTCTCC TCCTCCTCCT
  Y
  CTTCTCCTTC TCCTCCTCCT TCTATTCCTC CTTCTCCTCT TCCTCCTCCT CCTTCTCCTC
  CTCCTCCTCC TTCTCCTTCT TTTTAAAGAT TTATTTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588882	CHEV_2_158209168	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218915554					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225352 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1258 bp downstream
Tssr21319	transcription start site region 21319	844 bp downstream
Tssr21320	transcription start site region 21320	808 bp downstream
Tssr21321	transcription start site region 21321	698 bp downstream
Tssr21322	transcription start site region 21322	575 bp downstream
Tssr21323	transcription start site region 21323	531 bp downstream
Tssr21324	transcription start site region 21324	493 bp downstream
Tssr21325	transcription start site region 21325	457 bp downstream
Tssr21326	transcription start site region 21326	433 bp downstream
Tssr21327	transcription start site region 21327	396 bp downstream
Tssr21328	transcription start site region 21328	350 bp downstream
Tssr21329	transcription start site region 21329	337 bp downstream
Tssr21330	transcription start site region 21330	248 bp downstream
Tssr21331	transcription start site region 21331	249 bp upstream
Tssr21332	transcription start site region 21332	386 bp upstream
Tssr21333	transcription start site region 21333	418 bp upstream
Tssr21334	transcription start site region 21334	1185 bp upstream
Tssr21335	transcription start site region 21335	1541 bp upstream
Tssr21336	transcription start site region 21336	1595 bp upstream
Tssr21337	transcription start site region 21337	1699 bp upstream
Tssr27228	transcription start site region 27228	214 bp upstream