rs218925067 SNP Detail

Summary

• ID
  rs218925067
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCATTG CACATCTCGA
  TGGTCACCAA CACAGACAAG GCCATGGTCA TGGGCTCGGG GGCCTCAAAG ACCTCACAGT
  CCAGGCCATC GAATTCAGGG TTGTGCTCAG TGCACTGCAT GAAATGAGTC TATGAAGGAA
  GAGACAGAAG CCTGAGCTCC ACAGAAGCCT TCGGCACACC CTCTCAGGGC CCACCTCCCC
  W
  GCCTCCTTCC TACCAGCTGA TGGTAGCTGA CATGAGGCCC GTCCTCTGCA TACAAAAACC
  ACCAGGCAGC TGCTCCTACA GTGGCTGCAC CCACATAGCC TGTGGTGGGG AGAAGAGAGG
  AGCTGGGGTC AGGGCTGATG AGTTAAGTAT CAGGAAGACC TCACACAGCT GGAGACAGCT
  GGCTTTGGGC AGCTTGAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068753	MGP_WTSI_7_133591102	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218925067					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068753	MGP_WTSI_7_133591102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046760 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1681 bp downstream
Tssr2394	transcription start site region 2394	50 bp downstream
Tssr69022	transcription start site region 69022	1530 bp downstream
Tssr69023	transcription start site region 69023	317 bp upstream
Tssr74663	transcription start site region 74663	1534 bp upstream
Tssr74664	transcription start site region 74664	1000 bp upstream
Tssr74665	transcription start site region 74665	674 bp upstream
Tssr74666	transcription start site region 74666	615 bp upstream
Tssr74667	transcription start site region 74667	587 bp upstream
Tssr74668	transcription start site region 74668	384 bp upstream
Tssr74669	transcription start site region 74669	370 bp upstream
Tssr74670	transcription start site region 74670	114 bp upstream
Tssr74671	transcription start site region 74671	93 bp upstream
Tssr74672	transcription start site region 74672	76 bp upstream
Tssr74673	transcription start site region 74673	54 bp downstream
Tssr74674	transcription start site region 74674	83 bp downstream
Tssr74675	transcription start site region 74675	92 bp downstream
Tssr74676	transcription start site region 74676	307 bp downstream
Tssr74677	transcription start site region 74677	332 bp downstream
Tssr74678	transcription start site region 74678	364 bp downstream
Tssr74679	transcription start site region 74679	388 bp downstream
Tssr74680	transcription start site region 74680	406 bp downstream
Tssr74681	transcription start site region 74681	433 bp downstream
Tssr74682	transcription start site region 74682	447 bp downstream
Tssr74683	transcription start site region 74683	645 bp downstream
Tssr74684	transcription start site region 74684	748 bp downstream
Tssr74685	transcription start site region 74685	774 bp downstream
Tssr74686	transcription start site region 74686	1006 bp downstream
Tssr74687	transcription start site region 74687	1060 bp downstream
Tssr74688	transcription start site region 74688	1164 bp downstream
Tssr74689	transcription start site region 74689	1233 bp downstream
Tssr74690	transcription start site region 74690	1654 bp downstream
Tssr74691	transcription start site region 74691	1697 bp downstream