rs218929983 SNP Detail

Summary

• ID
  rs218929983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCCTCT TTCCCATCCA
  CTATTCCTTC CTTCTTCAGA AAAAAAGGAG CCCTACACCC CCTTCCCCCA GATATCTACA
  TGCTTTGGCA TACCATGTTG CTCAATAACT AGGCACAGAT TGGTGTTCTC TTTCAGAGGT
  CATGAAAGGC AGCCCAGAAG GGATAAAGTA TCCCAGAGAA AGCAATAGAG TAAGAAATAG
  W
  ACCTGGTATT GCTCTTAGGA GTCCCACATA AAGACCAGGT AAATGTGTAA ATGTACCATA
  TTCTCTGTAT CCATTCCTCT CTTGAGGGAT ATCTGGGTTC TTTCCAGCTT CTGACTACTA
  AAAATAAGGC TGCTATGAAC AAAATGGAGC ATGTTTCCTT ATTACCAGTT GGAGCATCTT
  CTGGGTATAT GCCCAGGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	ST/bJ
ss397836711	MGP_WTSI_17_23653793	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	A	A	T	A	T	A	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	ST/bJ
rs218929983					SNP	T	T	T	T	T	T	A	A	T	A	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836711	MGP_WTSI_17_23653793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735800 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1042 bp downstream
Rr329666	regulatory region 329666	1000 bp distal