rs218930380 SNP Detail

Summary

• ID
  rs218930380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78073332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agagatggc tcatctgttg agaacactga
  ctgttcttcc agaggtcctg agttcaattc ccagcaacca cacggtggct cacaaatgtc
  tgtagtggga tccgatgccc ccttctagtg agtgtatctg aagactgctg cagtgtactc
  R
  tgtaaataaa aaaacaaata aatcttaaaa aaaaaaGTGT GTTTCATAAC ACTATTCGAA
  GGCCATCACT CCCCAATTGG ACATCTTAAT CAACACTCTC CTGTGTTCCA ACAAGTCCCC
  TATCACTTGG AACCAAGATA AGCAACATCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756291	CHEV_11_77996008	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218930380					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78073332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	633 bp proximal
Rpl23a	ribosomal protein L23A	within coordinates
Rr402760	regulatory region 402760	932 bp upstream
Rr451902	regulatory region 451902	518 bp proximal
Rr451903	regulatory region 451903	738 bp proximal
Rr451904	regulatory region 451904	1068 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	750 bp upstream
Snord42a	small nucleolar RNA, C/D box 42A	1160 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	553 bp downstream
Tlcd1	TLC domain containing 1	1686 bp downstream
Tssr109378	transcription start site region 109378	666 bp downstream
Tssr109379	transcription start site region 109379	1045 bp downstream