rs218934678 SNP Detail

Summary

• ID
  rs218934678
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACTTTA CTACGAGAAA
  CGCTGATTGG GTTTTCGTAG CTGTGTTCCA GGTTTTTAGT ATCAGAACTA TTCTTTCTTT
  AACCTCTATT CATATTTTCT CTACTTGAAG TTTTACATTC AGGAAAACCT CAGCTCAGGA
  CTACTATGTA CCTCCCCTTT GGAGGGAAAA ATTATTTTAG GTAAAAGGCA AAAATTTTTT
  W
  AAAATATTTT TATTTATAAT TATATGGAAG GGCCCTACCA AGATGCTAGA AATATAGGGA
  GTTCCTGACA AGAAATTTCC ATTCTTATTC TGAAGAATTG CTTTCTTACT TAAAAACAAA
  GACAGTTTGT GAGTAGTTCT GGGCAATAGG GATAAATATA AAACAATAAT GATGATCATT
  TTCTACATCT CATTATCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888787	MGP_WTSI_1_151954326	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218934678					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888787	MGP_WTSI_1_151954326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982947 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9269	transcription start site region 9269	1791 bp downstream
Tssr9270	transcription start site region 9270	1760 bp downstream
Tssr9271	transcription start site region 9271	1737 bp downstream
Tssr9272	transcription start site region 9272	1706 bp downstream
Tssr9273	transcription start site region 9273	1662 bp downstream
Tssr9274	transcription start site region 9274	1642 bp downstream
Tssr9275	transcription start site region 9275	1610 bp downstream
Tssr9276	transcription start site region 9276	1596 bp downstream
Tssr9277	transcription start site region 9277	1540 bp downstream
Tssr9278	transcription start site region 9278	1519 bp downstream
Tssr9279	transcription start site region 9279	1501 bp downstream
Tssr9280	transcription start site region 9280	1401 bp downstream
Tssr9281	transcription start site region 9281	1381 bp downstream
Tssr9282	transcription start site region 9282	1347 bp downstream
Tssr9283	transcription start site region 9283	1332 bp downstream
Tssr9284	transcription start site region 9284	1320 bp downstream
Tssr9285	transcription start site region 9285	1306 bp downstream
Tssr9286	transcription start site region 9286	1227 bp downstream
Tssr9287	transcription start site region 9287	711 bp downstream
Tssr9288	transcription start site region 9288	597 bp downstream
Tssr9289	transcription start site region 9289	580 bp downstream
Tssr9290	transcription start site region 9290	426 bp downstream
Tssr9291	transcription start site region 9291	378 bp downstream
Tssr9292	transcription start site region 9292	250 bp downstream
Tssr9293	transcription start site region 9293	234 bp downstream
Tssr9294	transcription start site region 9294	211 bp downstream
Tssr9295	transcription start site region 9295	184 bp downstream
Tssr9296	transcription start site region 9296	172 bp downstream
Tssr9297	transcription start site region 9297	159 bp downstream
Tssr9298	transcription start site region 9298	133 bp downstream
Tssr9299	transcription start site region 9299	115 bp downstream
Tssr9300	transcription start site region 9300	96 bp downstream
Tssr9301	transcription start site region 9301	29 bp upstream
Tssr9302	transcription start site region 9302	59 bp upstream
Tssr9303	transcription start site region 9303	121 bp upstream
Tssr9304	transcription start site region 9304	145 bp upstream
Tssr9305	transcription start site region 9305	163 bp upstream
Tssr9306	transcription start site region 9306	175 bp upstream
Tssr9307	transcription start site region 9307	179 bp upstream
Tssr9308	transcription start site region 9308	212 bp upstream
Tssr9309	transcription start site region 9309	226 bp upstream
Tssr9310	transcription start site region 9310	257 bp upstream
Tssr9311	transcription start site region 9311	269 bp upstream
Tssr9312	transcription start site region 9312	294 bp upstream
Tssr9313	transcription start site region 9313	314 bp upstream
Tssr9314	transcription start site region 9314	325 bp upstream
Tssr9315	transcription start site region 9315	419 bp upstream
Tssr9316	transcription start site region 9316	602 bp upstream
Tssr9317	transcription start site region 9317	879 bp upstream
Tssr9318	transcription start site region 9318	1608 bp upstream