rs218939619 SNP Detail

Summary

• ID
  rs218939619
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGTGGTA GATGGTGGTG ACATCAGAGA
  CCTGCCACTG TTTCTTAGCA CTTTATGAAG AAAGGCTCTA AATTACCCCA GATAAAGAAA
  AACAGAAAGA AAGAGATCCC TCCTATGTCT TCCAATTGAC TAACAAGTGT CAGGTTATTT
  W
  TTATTAGAAT AAATTACATT TTCCTGGCAC AGGAAACATT TTGAAGAGGT GGAAATATAT
  GCTTCAATTG TGGTGGTGAC AGTAACAGAG ACAGTTGACA TCCACAAGGC AGACGAAAGA
  AAAAGGTTGA ATGCCATCAA CCTTTTCATC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548155	CHEV_2_147003294	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218939619					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	735 bp proximal
Cpgi12377	CpG island 12377	1084 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr566759	regulatory region 566759	44 bp proximal
Rr566760	regulatory region 566760	316 bp proximal
Rr566761	regulatory region 566761	710 bp proximal
Rr566762	regulatory region 566762	1398 bp proximal