rs218939719 SNP Detail

Summary

• ID
  rs218939719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16238404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTACTT AGCTCCTGGG TTTGTAGAAA
  CCGAAGTACT AAGAAGAAAC AGCTGTCTTG GTTGTATTTC AATGAACGTA ATGTTATTTC
  TTCAGTTTAC CATTTATGTT TGTTACATAA CTTAGGTCAT ACTTTTTTCT ACATTTGTGT
  R
  TAGTTGGATA AGTTTTTAAA GTGAACAGCA TTCTGTTTGA AATTTCGGGA TTACATTTAA
  ACTTGGCAAA TCACATGGCG TTCTATGCCA CATTGGGTGA AAATCATGCC CCAATCACTG
  AATAGAATCA GTGAAGTTGC TTGCAAGGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320670522	CHEV_3_16084240	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218939719					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16238404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			317 bp distal
Gm64384	predicted gene, 64384			522 bp upstream
Rr397612	regulatory region 397612			955 bp downstream
Rr573790	regulatory region 573790			994 bp distal
Rr573791	regulatory region 573791			533 bp distal
Rr573792	regulatory region 573792			32 bp distal
Tssr833	transcription start site region 833			622 bp upstream
Tssr28473	transcription start site region 28473			1034 bp downstream
Tssr28474	transcription start site region 28474			960 bp downstream
Tssr28475	transcription start site region 28475			932 bp downstream
Tssr28476	transcription start site region 28476			363 bp downstream
Tssr32661	transcription start site region 32661			553 bp upstream
Tssr32662	transcription start site region 32662			396 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant